Molecular Evolution and Bioinformatics Unit

2010

98. Sperling, E.A., Robinson, J.M., Pisani, D. and Peterson, K.J. (2010) Where's the Glass? Biomarkers, Molecular Clocks and microRNAs suggest a 200 Million Year Missing Precambrian Fossil Record of Siliceous Sponge Spicules. Geobiology 8:1 24-36.

2009

97. Sperling, E.A., Peterson, K.J. and Pisani, D. (2009) Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa. Molecular Biology and Evolution 26(10):2261-2274. pdf

96. Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KA, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MP, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NA, Lorenz MC, Birren BW, Kellis M, Cuomo CA. (2009) Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature. 459(7247):657-662. Link

95. Ragan, M.A., McInerney, J.O. and Lake, J.A. (2009) The network of life: genome beginnings and evolution. Philosophical Transactions of the Royal Society of London: B Series. 364, 2169-2175.pdf

94. Haggerty, L.S., Martin, F.J., Fitzpatrick, D.A. and McInerney, J.O. (2009) Gene and Genome Trees Conflict at Many Levels. Philosophical Transactions of the Royal Society of London: B Series. 364, 2209-2219.pdf

93. Hatadani, L.M., McInerney, J.O., de Medeiros, H.F., Martins Junqueira, A.C., de Azerdo-Espin, A.M. and Klaczko, L.B. (2008) Molecular Phylogeny of the Drosophila tripunctata and Closely Related Species Groups (Diptera: Drosophilidae). Molecular Phylogenetics and Evolution. 51(3):595-600. PMID: 19285146

92. Creevey, C.J. and McInerney, J.O. (2009) Trees from Trees: Constructing Phylogenetic Supertrees Using CLANN. In: DNA sequence analysis, Ed. David Posada. Humana Press. 537:139-161. pdf

91. Pisani D. (2009) Arthropoda. In: The Timetree of Life (S.B. Hedges and S. Kumar eds). Oxford University Press. ISBN13:9780199535033 572 pages.

90. Regeai, S.O., Dolan, K.M., Fitzpatrick, D.A., Browne, J.A., Jones, J.T. and Burnell, A.M. (2009). Novel primers for the amplification of nuclear DNA introns in the entomopathogenic nematode Heterorhabditis bacteriophora and their cross-amplification in seven other Heterorhabditis species. Molecular Ecology Resources 9(1) 421-424.

89. Martin, F.J. and McInerney, J.O. (2009) Recurring cluster and operon assembly for Phenylacetate degradation genes. BMC Evolutionary Biology 9:36 doi:10.1186/1471-2148-9-36. pdf

88. Fitzpatrick, D.A. (2009). Lines of evidence for horizontal gene transfer of a phenazine producing operon into multiple bacterial species. Journal of Molecular Evolution 68(2):171-85

2008

87. McCann, A., Cotton, J.A. and McInerney, J.O. (2008) The Tree of Genomes: An Empirical Comparison of Genome Phylogeny Reconstruction Methods. BMC Evolutionary Biology 8:312. pdf

86. Lloyd, G.T., Davis, K.E., Pisani, D., Tarver, J.E., Ruta, M., Sakamoto, M., Hone, D.W.E., Jennings, R. Benton, M.J. (2008) Dinosaurs and the Cretaceous Terrestrial Revolution. Philosophical Transactions of the Royal Society of London: Biological Sciences. 275 (1650) 2483-2490.

85. Peterson, K., Cotton, J.A., Gehling, J.G. and Pisani, D. (2008) The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records. Philosophical Transactions of the Royal Society of London: Biological Sciences. 363 (1496) 1435-1443.

84. McInerney, J.O., Cotton, J.A. and Pisani, D. (2008) The Prokaryotic Tree of Life: Past, Present...and Future? Trends in Ecology and Evolution 23 (5) 276-281

83. Fitzpatrick DA, Logue ME, Butler G. (2008). Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis. BMC Evolutionary Biology. 8:181.

2007

82. Johnston CR, O'dushlaine C, Fitzpatrick D.A., Edwards RJ, Shields DC. (2007). Evaluation Of Whether Accelerated Protein Evolution In Chordates Has Occurred Before, After Or Simultaneously With Gene Duplication. Molecular Biology and Evolution. Jan;24(1):315-23.

81. McInerney, J.O. and Pisani, D (2007) Genetics: Paradigm for Life. Science 318:1390-1391.

80. Pisani, D., Cotton, J.A. and McInerney, J.O. (2007). Supertrees Disentangle The Chimeric Origin of Eukaryotic genomes. Molecular Biology and Evolution 24(8):1752-1760. pdf

79. Sperling, E.A., Pisani D. and Peterson, K.J. (2007) Poriferan paraphyly and its implications for Precambrian palaeobiology. In: The Rise and Fall of the Ediacaran Biota. (Vickers-Rich P. and Komarower P. eds) Geological Society of London Special Publications 286:355-367. pdf not yet available

78. Pisani, D., Benton, M.J. and Wilkinson, M. (2007) Congruence of morphological and molecular phylogenies. Acta Biotheoretica 55:269-281.

77. Loader S., Pisani D., Cotton, J.A., Gower D., Day. J. and Wilkinson, M. (2007) Relative timescales reveal multiple origins of parallel disjunct distributions of African caecilian amphibians. Biology Letters 3(5):505-508

76. Ruta M., Pisani D., Lloyd G.T., and Benton M.J. (2007) A supertree of Temnospondyli (Amphibia): analysis of diversification rates in the most species-rich group of early tetrapods. Proceedings of the Royal Society B. 274:3087-3095

75. Peterson, K.J. Cotton, J.A., Gehling J.G. and Pisani D. (2007) The Timing of the Metazoan Radiation: Congruence between the Genetic and Geological Fossil Records. Philosophical Transactions of the Royal Society of London: Biological Sciences. 363:1435-1443.

74. Keane, T.M., Naughton, T.J. and McInerney, J.O. (2007). MultiPhyl: a high-throughput phylogenomics webserver using distributed computing. Nucleic Acids research doi:10.1093/nar/gkm359

73. Puigbo, P., Garcia-Vallve, S. and McInerney, J.O. (2007). TOPD/FMTS: a new software program to compare phylogenetic trees. Bioinformatics 23(12):1556-1558.

72. Wilkinson, M, McInerney, J.O., Hirt, R.P., Foster, P.G. and Embley, T.M. (2007). Of Clades and Clans: Terms for Phylogenetic Relationships in Unrooted Trees. Trends in Ecology and Evolution, 22(3) 114-115. pdf

71. O'Connell, M.J. and McInerney, J.O. (2007). Reconstructing the ancestral eukaryote: Lessons from the past. In Ancestral Sequence Reconstruction. Ed: David Liberles. Oxford University Press. pp103-113

70. McInerney J.O., Pisani D., O'Connell M.J., Fitzpatrick D.A. and Creevey C.J. (2007). The evolutionary history of the prokaryotes, or a prokaryotic phylogenetic tree: yes or no? In Towards the tree of life: taxonomy and systematics of large and species rich clades (T. Hodkinson, J. Parnell, and S. Waldren, eds.). CRC Press, UK.pdf

69. Harris, S.R., Pisani D., Gower, D., and Wilkinson, M. (2007) Investigating stagnation in morphological phylogenetics: An approach using consensus data. Systematic Biology 56:125-129. pdf

68. Wilkinson, M., Cotton, J.A., Lapointe, F.J. and Pisani, D. (2007) On some consensus properties of some supertree methods. Systematic Biology 56:330-337. pdf

2006

67. McInerney, J.O. (2006). The Causes of Protein Evolutionary Rate Variation. Trends in Ecology and Evolution, 21(5), 230-232. pdf

66. O'Halloran, D.M., Fitzpatrick, D.A., McCormack, G.P., McInerney, J.O. and Burnell, A.M. (2006). The Molecular Phylogeny and Functional Significance of a Nematode Specific Clade of Heterotrimeric G-protein -Subunit Genes. Journal of Molecular Evolution 63: 87-94.pdf

65. Pisani, D., Mohun, S.M., Harris, S.R., McInerney, J.O. and Wilkinson, M. (2006). Molecular Evidence for dim-light vision in the last common ancestor of the Vertebrates. Current Biology 16(9):318-319. pdf

64. Fitzpatrick D.A, Logue ME, Stajich JE, Butler G. (2006). A Fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. BMC Evol Biol. 6(1):99

63. McInerney, J.O., Pisani, D., O'Connell, M.J., Fitzpatrick, D.A. and Creevey, C.J. (2006). A Prokaryotic Phylogenetic Tree: Yes or No? In Towards the Tree of Life: taxonomy and systematics of large and species rich taxa. Eds: Trevor Hodkinson, John Parnell and Steve Waldren. CRC Press.

62. McInerney J.O., Finnerty C.S., Commins J.M., Philip G.K. (2006) Gene evolution and drug discovery. Methods in Molecular Biology, 316:87-109.

61. Keane T.M., Creevey, C.J., Pentony, M.M., Naughton, T.J. and McInerney, J.O. (2006) Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified, BMC Evolutionary Biology, 6:29 pdf

60. McInerney, J.O. (2006). On the Desirability of Models for Inference of Genome Phylogenies. Trends in Microbiology 14(1) pdf

59.Fitzpatrick, D.A., O'Halloran, D.M. and Burnell, A.M. Multiple Lineage Specific Expansions in the Guanylyl Cyclase Gene Family. BMC Evolutionary Biology 2006, 6:26.

58. Fitzpatrick, D.A., Creevey, C.J. and McInerney, J.O. (2006). Genome Phylogenies Indicate a Meaningful -Proteobacterial Phylogeny and Support A Grouping of the Mitochondria With the Rickettsiales. Molecular Biology and Evolution 23: 74-85. pdf

57. Keane, T.M., Page, A.J., Naughton, T.J, Travers, S.A.A, McInerney, J.O. (2006). Building large phylogenetic trees on coarse-grained parallel machines. Algorithmica. 45(3), 285-300pdf

56. Pisani, D., Samantha, M. Mohun, Simon, R. Harris, James, O. McInerney and Mark Wilkinson (2006). Molecular evidence for dim-light vision in the last common ancestor of the vertebrates. Current Biology 16(9):R318. Paper pdf; Supplementary Info pdf;

55. Smith, A.B., Pisani, D., MacKenzie Dodds, J.A., Stockley, B., Webster, B., and Littlewood, (2006) T. Testing the molecular clock: molecular and paleontological estimates of rates and patterns of evolution in the Echinoidea (Echinodermata). Molecular Biology and Evolution 23(10):1832-1851. pdf

2005

54. Shannon, A. Browne, JA. Boyd, J. Fitzpatrick, DA and Burnell, AM (2005). The anhydrobiotic potential and molecular phylogenetics of species and strains of Panagrolaimus. Journal of Experimental Biology 208:2433-2445.

53. O'Connell, M.J. and McInerney, J.O. (2005). Adaptive Evolution of the Human Fatty Acid Synthase Gene: Support for the Cancer Selection and Fat Utilisation Hypotheses? Gene 360, 151-159.pdf

52. O'Connell, M.J. and McInerney, J.O. (2005). Gamma Chain Receptor Interleukins: Evidence for Positive Selection Driving the Evolution of Cell-to-Cell Communicators in the Mammalian Immune System. Journal of Molecular Evolution Nov; 61(5): 608-619.

51. Wilkinson, M., Cotton, J., Creevey, C.J., Eulenstein O., Harris, S.R., Lapointe, F-J. McInerney, J.O., Pisani, D and J. Thorley (2005). The Shape of Supertrees to Come: Input Tree Shape Biases and Some Axiomatic Properties of Fourteen Supertree Methods. Systematic Biology 54(3): 419-431. pdf

50. Fitzpatrick, D.A., Creevey, C.J. and McInerney, J.O. (2005) Evidence of Positive Darwinian Selection in Putative Meningococcal Vaccine Antigens. Journal of Molecular Evolution 60 (1), 90-98.pdf

49. Philip, G.K., Creevey, C.J. and McInerney, J.O. (2005). The Opisthokonta and the Ecdysozoa may not be Clades: Stronger Support for the Grouping of Plant and Animal than for Animal and Fungi and Stronger Support for the Coelomata than Ecdysozoa. Molecular Biology and Evolution 22, 1175-1184. pdf

48. Keane, T.M., Naughton, T.J., Travers, S.A.A, McInerney, J.O. and McCormack, G.P. (2005). DPRml: Distributed Phylogeny Reconstruction by Maximum Likelihood. Bioinformatics 21: 969-974. pdf

47. McInerney, J.O. and Wilkinson, M. (2005). New Methods Ring Changes for The Tree of Life. Trends in Ecology and Evolution 20 (3) 105-107. pdf

46. Fitzpatrick, D.A. and McInerney, J.O. (2005). Evidence of Positive Darwinian Selection in Omp85, a Highly Conserved Bacterial Outer Membrane Protein Essential for Cell Viability. Journal of Molecular Evolution 60(2) 268-273. pdf

45. Creevey, C.J. and McInerney, J.O. (2005). CLANN: Investigating Phylogenetic Information Through Supertree Analysis. Bioinformatics 21 (3) 390-392. pdf

44. Travers, S.A.A., O'Connell, M.J., McCormack, G.P. and McInerney, J.O. (2005). Evidence for heterogeneous selective pressures in the evolution of the env gene in different HIV-1 subtypes. Journal of Virology 79 (3) 1836-1841. pdf

43. Hone, D., Keesey, T.M., Pisani, D. & Purvis, A. (2005). Macroevolutionay Trends within Dinosauria: Cope's Rule. Journal of Evolutionary Biology 18:587-595. pdf

42. Wilkinson, M., Cotton, J.A., Creevey, C., Eulenstein, O., Harris, S.R., Lapointe, F.-J., Levasseur, C., McInerney, J.O., Pisani, D., Thorley, J.L. (2005). The shape of supertrees to come: tree shape related properties of fourteen supertree methods. Systematic Biology 54:419-31. pdf

41. Wilkinson, M., Pisani, D., Cotton, J. & Corfe, I. (2005). Measuring Support and Finding Unsupported Relationships in Supertrees. Systematic Biology 54:823-831. pdf

2004

40. Creevey, C.J., Fitzpatrick, D.A., Philip, G.K., Kinsella, R.J., O'Connell, M.J., Pentony, M.M., Travers, S.A.A., Wilkinson, M., and McInerney, J.O. (2004). Does a Tree-like Phylogeny Only Exist at the Tips in the Prokaryotes? Proceedings of The Royal Society of London, Biology Series 271(1557):2551-8. pdf

39. Travers, S.A.A., Clewley, J.P., Glynn, J.R., Fine, P.E.M., Crampin, A.C., Sibande, F., Mulawa, D., McInerney, J.O., and McCormack, G.P. (2004). Timing and Reconstruction of the Most Recent Common Ancestor of the Subtype C Clade of Human Immunodeficiency Virus Type 1. Journal of Virology 78 (19), 10501-10506. pdf

38. Casey, O.M., Fitzpatrick, R., McInerney, J. O., Morris, D., Powell, R., and Sreenan, J.M. (2004). Analysis of gene expression in the bovine corpus luteum through generation and characterisation of 960 ESTs. Biochim Biophys Acta. 1679(1):10-17. pdf

37. Wilkinson, M., Thorley, J.L., Pisani, D.E., Lapointe, F-J and McInerney, J.O. (2004) Some Desiderata for Meta-Analytical Supertrees. In Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life. Kluwer Academic Publishers, Dordrecht. ISBN 1-4020-2329-4. 564 pp.

36. Mahony, S., McInerney, J.O, Smith, T. and Golden, A (2004) Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models. BMC Bioinformatics 5(1): 23. pdf

35. Wilkinson, M., Thorley, J.L, Pisani, D., Lapointe F.-J. & McInerney, J.O. (2004). Some Desiderata of Liberal Supertrees. In Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life (O.R.P. Bininda-Emonds, Ed). Kluwer series in Computational Biology, Volume 4. Kluwer Academic Publishers, Dordrecht. pdf

34. Pisani, D., Poling, L. & Hedges, S.B. (2004). A Molecular Clock Analysis of Arthropod Evolution and the Colonization of Land by Animals. BMC Biology 2:1. pdf

33. Pisani D. (2004) Removing Fast Evolving Sites Using Compatibility Methods: An Example from the Arthropoda. Systematic Biology 53(6):983-994.

2003

32. Kinsella, R.J. and McInerney J.O. (2003). Eukaryotic genes in Mycobacterium tuberculosis? Possible alternative explanations. Trends in Genetics, 19, issue 12 687-689.pdf

31. McInerney, J.O., Littlewood, D.T.J. and Creevey, C.J. (2003). Detecting Adaptive Molecular Evolution: Additional Tools for the Parasitologist. Advances in Parasitology 54, 360-379.pdf

30. Kinsella, R.J., Fitzpatrick, D.A., Creevey, C.J. and McInerney J.O. (2003). Fatty acid biosynthesis in Mycobacterium tuberculosis: Lateral gene transfer, adaptive evolution and gene duplication. Proceedings of the National Academy of Sciences USA, 100, 10320-10325. pdf

29. Creevey, C.J. and McInerney J.O. (2003). CRANN: A Program for Detecting Adaptive Evolution in Protein-Coding DNA Sequences. Bioinformatics. 19, issue 13, 1726. pdf

28. Enright M.R., McInerney J.O. and Griffin CT. (2003). Characterization of endospore-forming bacteria associated with entomopathogenic nematodes, Heterorhabditis spp., and description of Paenibacillus nematophilus sp. nov. (2003) International Journal of Systematic and Evolutionary Microbiology. 53 435-441. pdf

2002

27. Pisani, D., Yates, A.M., Langer, M.C. & Benton, M. J. (2002). A Phylogenetic Supertree of the Dinosauria. Proceedings of the Royal Society of London, B 269:915-921. pdf

26. Creevey, C.J. and McInerney, J.O. (2002) An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences. Gene: 300 (1-2) 43-51.pdf

25. Keane, T., Allen, R., Naughton, T.J., McInerney, J.O. and J. Waldron (2002). Distributed computing for DNA analysis. in Principles and Practice of Programming in Java. James F. Power and John T. Waldron, Eds., pp. 65-70.

24. McInerney, J.O., Wernecke, M., Mullarkey, M. and Powell, R. (2002) Bacteria and Archaea: Molecular techniques reveal astonishing novel diversity. Biodiversity 3:3-10.pdf

23. McInerney, J. O. (2002) Bioinformatics in a Post-Genomic Era - The need for an Integrative Approach. The Pharmacogenomics Journal. 2:207-208. pdf

22. Pisani, D. & Wilkinson, M. (2002). MRP, Total Evidence, and Taxonomic Congruence. Systematic Biology 51:151-155. pdf

1995-2002

21. Enright, M.R., Finnegan, M.M., McInerney, J.O., O'Laighleis, M., and Griffin, C.T. (2001) Specific adherence of psorangia of a Paenibacillus sp. Bacterium to Heterohabditis spp. Nematodes: Hitching a ride to lunch? In Developments in Entomopathogenic Nematode/Bacterial Research, pp 301-306.

20. McInerney JO, Mullarkey M, Wernecke ME and Powell R. (2001) The impact of taxonomic gene libraries on our knowledge of bacterial diversity: an example using the marine Archaea. In Biological Collections and Biodiversity. Eds. B.S. Rushton, P. Hacknet and C.R. Tyrie, Ch. 17, pp 155-163, Linnean Society Occasional Papers 3.

19. Murphy, M., Harte, T., McInerney, J.O., and Smith, T. (2000). Molecular Cloning Of Atlantic Salmon Nucleoside Diphosphate Kinase And Its Pattern Of Expression During Embryogenesis. Gene 257(1) 139-148.pdf

18. McCormack, G.P., Keegan, B.F., McInerney, J.O. and Powell, R (2000). Spectral Analysis of Echinoderm 18S Ribosomal DNA data. Molecular Phylogenetics and Evolution. 15(2) 327-329.

17. McInerney, J.O. and Wolfe, K.H. (1999). Genomic Analysis Methods. Microbiology Today, Vol. 26 p157-159. pdf

16. McInerney, J.O., Adams, C.L., Borges, K., and Kelly-Borges, M. (1999). Phylogenetic Resolution Potential Of 18S And 28S rRNA Genes Within The Lithistid Astrophorida. Memoirs of the Queensland Museum: 44 343-353

15. Adams, C.L., McInerney, J.O. and Kelly-Borges, M. (1999). Indications Of Relationships Between Poriferan Classes Using Full-Length 18S rRNA Gene Sequences. Memoirs of the Queensland Museum: 44 33-45.

14. McInerney, J.O. (1998). Replicational and Transcriptional Selection on Codon Usage in Borrelia burgdorferi. Proceedings of the National Academy of Sciences USA: 95 10698-10703.pdf

13. Pisani, D. & Bulla S. (1998). Andamento dell'attivita' diurna in funzione della strategia predatoria in Podarcis sicula (Reptilia, Squamata, Lacertidae). Rivista di Idrobiologia 38:409-415. [In Italian with English Summary].

12. Goldman, G.H., Pellizzon, C.H., Marins, M., McInerney, J.O., and de S. Goldman, M.H., (1998). Trichoderma spp. genome and gene structure. In: Trichoderma and Gliocladium. Ed.s P. Kubicek and G.E. Harman. Taylor and Francis, London, UK. pp. 209-224.

11. McInerney, J.O. (1998). GCUA (General Codon Usage Analysis). Bioinformatics: 14 (4) 372-373. pdf

10. McInerney, J.O., Mullarkey, M., Wernecke, M. and Powell, R. (1997). Phylogenetic Analysis of Marine Archaeal rRNA Sequences Emphasizes The Hidden Diversity Within The Archaea. Proceedings of the Royal Society of London (Biology series): 264 1-7. pdf

9. McInerney, J.O. (1997). Prokaryotic Genome Evolution As Assessed By Multivariate Analysis of Codon Usage Patterns. Microbial and Comparative Genomics: 2 (1), 1-10.

8. McInerney, J.O. (1997). Codon Usage in Trichomonas vaginalis. European Journal of Protistology: 33(3), 266-273.

7. McInerney, J.O. (1996). Codon Usage in The Atlantic salmon (Salmo salar L.). (1996) Molecular Marine Biology and Biotechnology: 5 (3), 344-351.

6. McCormack, G., Mooney, J., McInerney, J.O., Powell, R. and Keegan, B. (1995) Comparison of DNA extraction techniques from amphuirid species (Ophiuroidea: Echinodermata) suitable for polymerase chain reaction. In: Echinoderm Research 1995. Ed.s R.H. Emson, A.B. Smith and A.C. Campbell. A.A. Balkema, Rotterdam. pp. 43-50.

5. McInerney, J.O., Wilkinson, M., Patching, J.W., Embley, T.M. and Powell, R. (1995). Recovery and Phylogenetic Analysis of Archaeal SSU rRNA Sequences From a Deep-Sea Deposit Feeder. Applied and Environmental Microbiology: 61 (4), 1646-1648. pdf

4. McInerney, J.O., Paskins, L., Eardly, D., Patching, J.W., and Powell, R. (1995). Extraction of Prokaryotic genomic DNA from Marine Microbial Communities, Suitable For Use In The Polymerase Chain Reaction. International Revue der Gesamten Hydrobiologie: 80 (2), 351-360.

3. Powell, R., Mullarkey, M., O'Brien, D.J. and McInerney, J.O. (1995). Detection of Microorganisms In The Environment. Biochemical Society Transactions: 23, 435-437.

2. Doyle, L., McInerney, J.O., Mooney, J., Powell, R., Haikara, A. and Moran, A.T. (1995). Sequence of the Gene Encoding The 16S rRNA Of The Beer-Spoilage Organism Megasphaera cerevisiae. J. Industrial Microbiology: 15, 67-70.

1. Hanley, S. McInerney, J.O., and Powell R. (1995). Sequence Analysis and Evolutionary Aspects of Piscine alpha-1-Microglobulin/Bikunin mRNA Transcripts. Molecular Marine Biology and Biotechnology: 4 (2), 105-109.